pythoncyc
latest
pythoncyc package
pythoncyc
Docs
»
Edit on GitHub
Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
A
activation_p() (pythoncyc.PGDB.PGDB method)
adjacent_genes_p() (pythoncyc.PGDB.PGDB method)
all_cofactors() (pythoncyc.PGDB.PGDB method)
all_direct_forms_of_protein() (pythoncyc.PGDB.PGDB method)
all_enzymes() (pythoncyc.PGDB.PGDB method)
all_forms_of_protein() (pythoncyc.PGDB.PGDB method)
all_genetic_regulation_proteins() (pythoncyc.PGDB.PGDB method)
all_modulators() (pythoncyc.PGDB.PGDB method)
all_operons() (pythoncyc.PGDB.PGDB method)
all_orgids() (in module pythoncyc)
all_pathways() (pythoncyc.PGDB.PGDB method)
all_products_of_gene() (pythoncyc.PGDB.PGDB method)
all_protein_complexes() (pythoncyc.PGDB.PGDB method)
all_reactions() (pythoncyc.PGDB.PGDB method)
all_rxns() (pythoncyc.PGDB.PGDB method)
all_sigma_factors() (pythoncyc.PGDB.PGDB method)
all_substrates() (pythoncyc.PGDB.PGDB method)
all_transcription_factors() (pythoncyc.PGDB.PGDB method)
all_transported_chemicals() (pythoncyc.PGDB.PGDB method)
all_transporters() (pythoncyc.PGDB.PGDB method)
all_transporters_across() (pythoncyc.PGDB.PGDB method)
autocatalytic_reactions_of_enzyme() (pythoncyc.PGDB.PGDB method)
B
base_components_of_protein() (pythoncyc.PGDB.PGDB method)
binding_site_promoters() (pythoncyc.PGDB.PGDB method)
binding_site_to_regulators() (pythoncyc.PGDB.PGDB method)
binding_site_transcription_units() (pythoncyc.PGDB.PGDB method)
binding_sites_affecting_gene() (pythoncyc.PGDB.PGDB method)
biovelo() (in module pythoncyc)
bv() (in module pythoncyc)
C
chromosome_of_gene() (pythoncyc.PGDB.PGDB method)
chromosome_of_object() (pythoncyc.PGDB.PGDB method)
chromosome_of_operon() (pythoncyc.PGDB.PGDB method)
cofactors_and_pgroups_of_enzrxn() (pythoncyc.PGDB.PGDB method)
compartment_of_rxn() (pythoncyc.PGDB.PGDB method)
compartments_of_reaction() (pythoncyc.PGDB.PGDB method)
complex_p() (pythoncyc.PGDB.PGDB method)
compounds_of_pathway() (pythoncyc.PGDB.PGDB method)
containers_of() (pythoncyc.PGDB.PGDB method)
containing_chromosome() (pythoncyc.PGDB.PGDB method)
containing_tus() (pythoncyc.PGDB.PGDB method)
convertArgToLisp() (in module pythoncyc.PGDB)
convertLispIdtoPythonId() (in module pythoncyc.PToolsFrame)
cotranscribed_genes() (pythoncyc.PGDB.PGDB method)
create_frame_objects() (pythoncyc.PGDB.PGDB method)
D
deactivated_or_inhibited_by_compound() (pythoncyc.PGDB.PGDB method)
direct_activators() (pythoncyc.PGDB.PGDB method)
direct_inhibitors() (pythoncyc.PGDB.PGDB method)
direct_regulators() (pythoncyc.PGDB.PGDB method)
dna_binding_site_p() (pythoncyc.PGDB.PGDB method)
DNA_binding_sites_of_protein() (pythoncyc.PGDB.PGDB method)
E
enzrxn_activators() (pythoncyc.PGDB.PGDB method)
enzrxn_inhibitors() (pythoncyc.PGDB.PGDB method)
enzyme_activity_name() (pythoncyc.PGDB.PGDB method)
enzyme_p() (pythoncyc.PGDB.PGDB method)
enzymes_of_gene() (pythoncyc.PGDB.PGDB method)
enzymes_of_pathway() (pythoncyc.PGDB.PGDB method)
enzymes_of_reaction() (pythoncyc.PGDB.PGDB method)
F
full_enzyme_name() (pythoncyc.PGDB.PGDB method)
G
gene_clusters() (pythoncyc.PGDB.PGDB method)
gene_p() (pythoncyc.PGDB.PGDB method)
gene_transcription_units() (pythoncyc.PGDB.PGDB method)
genes_in_same_operon() (pythoncyc.PGDB.PGDB method)
genes_of_pathway() (pythoncyc.PGDB.PGDB method)
genes_of_protein() (pythoncyc.PGDB.PGDB method)
genes_of_proteins() (pythoncyc.PGDB.PGDB method)
genes_of_reaction() (pythoncyc.PGDB.PGDB method)
genes_regulated_by_gene() (pythoncyc.PGDB.PGDB method)
genes_regulated_by_protein() (pythoncyc.PGDB.PGDB method)
genes_regulating_gene() (pythoncyc.PGDB.PGDB method)
get_class_all_instances() (pythoncyc.PGDB.PGDB method)
get_class_all_subs() (pythoncyc.PGDB.PGDB method)
get_class_data() (pythoncyc.PGDB.PGDB method)
get_frame_data() (pythoncyc.PToolsFrame.PFrame method)
get_frame_objects() (pythoncyc.PGDB.PGDB method)
get_frame_slot_value() (pythoncyc.PToolsFrame.PFrame method)
get_major_classes() (pythoncyc.PGDB.PGDB method)
get_name_string() (pythoncyc.PGDB.PGDB method)
get_predecessors() (pythoncyc.PGDB.PGDB method)
get_slot_value() (pythoncyc.PGDB.PGDB method)
get_slot_values() (pythoncyc.PGDB.PGDB method)
get_successors() (pythoncyc.PGDB.PGDB method)
H
homomultimeric_containers_of() (pythoncyc.PGDB.PGDB method)
I
inhibition_p() (pythoncyc.PGDB.PGDB method)
is_a_class_name() (pythoncyc.PGDB.PGDB method)
is_an_instance_name() (pythoncyc.PGDB.PGDB method)
L
leader_peptide_p() (pythoncyc.PGDB.PGDB method)
M
may_be_frameid() (in module pythoncyc.PGDB)
mkey() (in module pythoncyc.PGDB)
modified_and_unmodified_forms() (pythoncyc.PGDB.PGDB method)
modified_containers() (pythoncyc.PGDB.PGDB method)
modified_forms() (pythoncyc.PGDB.PGDB method)
monomers_of_protein() (pythoncyc.PGDB.PGDB method)
N
neighboring_genes_p() (pythoncyc.PGDB.PGDB method)
next_gene_on_replicon() (pythoncyc.PGDB.PGDB method)
noncontiguous_pathway_p() (pythoncyc.PGDB.PGDB method)
nonspecific_forms_of_rxn() (pythoncyc.PGDB.PGDB method)
O
operon_of_gene() (pythoncyc.PGDB.PGDB method)
P
pathway_allows_enzrxn() (pythoncyc.PGDB.PGDB method)
pathway_components() (pythoncyc.PGDB.PGDB method)
pathway_hole_p() (pythoncyc.PGDB.PGDB method)
pathways_of_compound() (pythoncyc.PGDB.PGDB method)
pathways_of_enzrxn() (pythoncyc.PGDB.PGDB method)
pathways_of_gene() (pythoncyc.PGDB.PGDB method)
PFrame (class in pythoncyc.PToolsFrame)
PGDB (class in pythoncyc.PGDB)
phantom_gene_p() (pythoncyc.PGDB.PGDB method)
polypeptide_or_homomultimer_p() (pythoncyc.PGDB.PGDB method)
prepareFnCall() (in module pythoncyc.PGDB)
previous_gene_on_replicon() (pythoncyc.PGDB.PGDB method)
promoter_binding_sites() (pythoncyc.PGDB.PGDB method)
protein_coding_gene() (pythoncyc.PGDB.PGDB method)
protein_in_compartment_p() (pythoncyc.PGDB.PGDB method)
protein_or_rna_containers_of() (pythoncyc.PGDB.PGDB method)
protein_p() (pythoncyc.PGDB.PGDB method)
pseudo_gene_p() (pythoncyc.PGDB.PGDB method)
PToolsError
put_slot_value() (pythoncyc.PGDB.PGDB method)
put_slot_values() (pythoncyc.PGDB.PGDB method)
pythoncyc (module)
pythoncyc.config (module)
pythoncyc.PGDB (module)
pythoncyc.PTools (module)
pythoncyc.PToolsFrame (module)
PythonCycError
R
reaction_reactants_and_products() (pythoncyc.PGDB.PGDB method)
reaction_type() (pythoncyc.PGDB.PGDB method)
reactions_of_compound() (pythoncyc.PGDB.PGDB method)
reactions_of_enzyme() (pythoncyc.PGDB.PGDB method)
reactions_of_gene() (pythoncyc.PGDB.PGDB method)
reactions_of_protein() (pythoncyc.PGDB.PGDB method)
recvAll() (in module pythoncyc.PTools)
recvFixedLength() (in module pythoncyc.PTools)
recvTimeOut() (in module pythoncyc.PTools)
reduce_modified_proteins() (pythoncyc.PGDB.PGDB method)
regulation_frame_transcription_units() (pythoncyc.PGDB.PGDB method)
regulator_of_type() (pythoncyc.PGDB.PGDB method)
regulator_proteins_of_transcription_unit() (pythoncyc.PGDB.PGDB method)
regulators_of_gene_transcription() (pythoncyc.PGDB.PGDB method)
regulators_of_operon_transcription() (pythoncyc.PGDB.PGDB method)
regulon_of_protein() (pythoncyc.PGDB.PGDB method)
rna_coding_gene() (pythoncyc.PGDB.PGDB method)
run_fba() (in module pythoncyc)
(pythoncyc.PGDB.PGDB method)
rxn_in_compartment_p() (pythoncyc.PGDB.PGDB method)
rxn_present_p() (pythoncyc.PGDB.PGDB method)
rxn_specific_form_of_rxn_p() (pythoncyc.PGDB.PGDB method)
rxn_w_isozymes_p() (pythoncyc.PGDB.PGDB method)
rxn_without_sequenced_enzyme_p() (pythoncyc.PGDB.PGDB method)
rxns_adjacent_in_pwy_p() (pythoncyc.PGDB.PGDB method)
rxns_catalyzed_by_complex() (pythoncyc.PGDB.PGDB method)
rxns_w_isozymes() (pythoncyc.PGDB.PGDB method)
S
save_pgdb() (pythoncyc.PGDB.PGDB method)
select_organism() (in module pythoncyc)
sendAll() (in module pythoncyc.PTools)
sendPgdbFnCall() (pythoncyc.PGDB.PGDB method)
sendPgdbFnCallBool() (pythoncyc.PGDB.PGDB method)
sendPgdbFnCallList() (pythoncyc.PGDB.PGDB method)
sendPgdbQuery() (pythoncyc.PGDB.PGDB method)
sendQueryToPTools() (in module pythoncyc.PTools)
set_debug_off() (in module pythoncyc.config)
set_debug_on() (in module pythoncyc.config)
set_host_name() (in module pythoncyc.config)
set_host_port() (in module pythoncyc.config)
small_molecule_cplxes_of_prot() (pythoncyc.PGDB.PGDB method)
so() (in module pythoncyc)
species_of_protein() (pythoncyc.PGDB.PGDB method)
specific_forms_of_rxn() (pythoncyc.PGDB.PGDB method)
substrate_of_generic_rxn() (pythoncyc.PGDB.PGDB method)
substrates_of_pathway() (pythoncyc.PGDB.PGDB method)
substrates_of_reaction() (pythoncyc.PGDB.PGDB method)
Symbol (class in pythoncyc.PToolsFrame)
T
terminator_p() (pythoncyc.PGDB.PGDB method)
terminators_affecting_gene() (pythoncyc.PGDB.PGDB method)
tfs_bound_to_compound() (pythoncyc.PGDB.PGDB method)
top_containers() (pythoncyc.PGDB.PGDB method)
transcription_factor_active_forms() (pythoncyc.PGDB.PGDB method)
transcription_factor_ligands() (pythoncyc.PGDB.PGDB method)
transcription_factor_p() (pythoncyc.PGDB.PGDB method)
transcription_unit_activation_frames() (pythoncyc.PGDB.PGDB method)
transcription_unit_activators() (pythoncyc.PGDB.PGDB method)
transcription_unit_all_components() (pythoncyc.PGDB.PGDB method)
transcription_unit_binding_sites() (pythoncyc.PGDB.PGDB method)
transcription_unit_first_gene() (pythoncyc.PGDB.PGDB method)
transcription_unit_genes() (pythoncyc.PGDB.PGDB method)
transcription_unit_inhibition_frames() (pythoncyc.PGDB.PGDB method)
transcription_unit_inhibitors() (pythoncyc.PGDB.PGDB method)
transcription_unit_mrna_binding_sites() (pythoncyc.PGDB.PGDB method)
transcription_unit_promoter() (pythoncyc.PGDB.PGDB method)
transcription_unit_regulation_frames() (pythoncyc.PGDB.PGDB method)
transcription_unit_terminators() (pythoncyc.PGDB.PGDB method)
transcription_unit_transcription_factors() (pythoncyc.PGDB.PGDB method)
transcription_units_of_promoter() (pythoncyc.PGDB.PGDB method)
transcription_units_of_protein() (pythoncyc.PGDB.PGDB method)
transported_chemicals() (pythoncyc.PGDB.PGDB method)
U
unmodified_form() (pythoncyc.PGDB.PGDB method)
unmodified_gene_product() (pythoncyc.PGDB.PGDB method)
unmodified_gene_products() (pythoncyc.PGDB.PGDB method)
unmodified_or_unbound_form() (pythoncyc.PGDB.PGDB method)
V
variants_of_pathway() (pythoncyc.PGDB.PGDB method)
vectorize_dict() (pythoncyc.PToolsFrame.PFrame method)
Read the Docs
v: latest
Versions
latest
Downloads
pdf
htmlzip
epub
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.